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The Exon-Intron Database

An exhaustive database of protein-coding intron-containing genes
Serge Saxonov, Iraj Daizadeh, Alexei Fedorov, and Walter Gilbert
Nucleic Acids Res. 2000 Jan 1;28(1):185-190.

Type of Exon-Intron Database	Date	Unix gzip-ed (links)	Uncompressed size
EID126 (from GenBank release 126)	Dec. 2002	0.21 GB	0.93 GB
EID140 (from GenBank release 140)	Mar. 2004	0.30 GB	1.45 GB
Human Genome EID (GenBank build 35)	Dec. 2004	0.45 GB	1.55 GB
Mouse Genome EID (GenBank build 2)	Jan. 2005	0.31 GB	1.1 GB
Rat Genome EID (GenBank build 2)	Jan. 2005	0.30 GB	0.8 GB
Mammalian Orthologous Intron Database	April 2005	0.85 GB	3.3 GB

New Releases of Exon-Intron Database, September 2005
Species name	EID	UID	ILD
Human (GenBank 35.1)	hs35p1.EID.tar.gz	hs35p1.UID.tar.gz	hs35p1.ILD.tar.gz
Mouse (GenBank 34.1)	mm34p1.EID.tar.gz	mm34p1.UID.tar.gz	mm34p1.ILD.tar.gz
Rat (GenBank 3.1)	rn3p1.EID.tar.gz	rn3p1.EID.tar.gz	rn3p1.EID.tar.gz
Dog (GenBank 2.1)	cfa2p1.EID.tar.gz	cfa2p1.UID.tar.gz	cfa2p1.ILD.tar.gz
Chicken (GenBank 1.1)	gga1p1.EID.tar.gz	gga1p1.UID.tar.gz	gga1p1.ILD.tar.gz
Danio rerio (release Zv4)	drzv4.EID.tar.gz	drzv4.UID.tar.gz	drzv4.ILD.tar.gz
C. elegans (GenBank 2003)	ce2003.EID.tar.gz	ce2003.UID.tar.gz	ce2003.ILD.tar.gz
D. melanogaster (4.1)	dm4p1.EID.tar.gz	dm4p1.UID.tar.gz	dm4p1.ILD.tar.gz
A. thaliana (2004)	at2004.EID.tar.gz	at2004.EID.tar.gz	at2004.EID.tar.gz
gb149 (original EID)
MOID release 2	September 2005 (MOID_Sept05.tar.gz)
Instructions	README_Sept05

README — Explanations about new releases of Exon-Intron Database (EID)

SNO.pl — This program searches for conserved structures characteristic for C/D box snoRNA

TARGETmrna.pl — This program searches for the targets of snoRNA antisense elements among all mRNA sequences of human, mouse and rat

57snoRNA

Link to Alexei Fedorov home page

NOTE: original EID at www.mcb.harvard.edu/gilbert/EID was closed by the host

Questions or Comments:

Alexei Fedorov, Ph.D.
Assistant Professor, Department of Medicine
Head of Bioinformatics Lab
Medical University of Ohio
3120 Glendale Avenue
Toledo, OH 43614-5809

Phone: (419)-383-5270
Fax: (419)-383-3102
E -mail: afedorov@meduohio.edu